The University of Queensland

Hydrogen and Polyhidroxybutyrate (PHB) Production by a Photoheterotrophic Mixed Culture

García-Peña, E. I. and Gonzalez-Garcia, R. A. (2020). Hydrogen and Polyhidroxybutyrate (PHB) Production by a Photoheterotrophic Mixed Culture. Encyclopedia of Plant Science. (pp. 575-588) Hauppauge, NY United States: Nova Science Publishers.

Hydrogen and polyhidroxybutyrate (PHB) production by a photoheterotrophic mixed culture

Garcia-Pena, E. I. and Gonzalez-Garcia, R. A. (2015). Hydrogen and polyhidroxybutyrate (PHB) production by a photoheterotrophic mixed culture. Microalgae and other phototrophic bacteria: culture, processing, recovery and new products. (pp. 111-124) Hauppauge, NY, United States: Nova Science Publishers.

Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations

Heffernan, James, Garcia Gonzalez, R. Axayactl, Mahamkali, Vishnu, McCubbin, Tim, Daygon, Dara, Liu, Lian, Palfreyman, Robin, Harris, Audrey, Koepke, Michael, Valgepea, Kaspar, Nielsen, Lars Keld and Marcellin, Esteban (2024). Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations. Microbial Biotechnology, 17 (4) e14452, e14452. doi: 10.1111/1751-7915.14452

Design of a microbial photoheterotrophic consortia for biohydrogen production under nongrowing conditions: Insight into microbial associations

Velasco, A., Guerra-Blanco, P., Gonzalez, A., Salgado-Manjarrez, z e E., Aranda-Barradas, J. and Garcia-Pena, E. I. (2024). Design of a microbial photoheterotrophic consortia for biohydrogen production under nongrowing conditions: Insight into microbial associations. International Journal of Hydrogen Energy, 60, 1299-1308. doi: 10.1016/j.ijhydene.2024.02.177

Characterisation of acetogen formatotrophic potential using Eubacterium limosum

Wood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Characterisation of acetogen formatotrophic potential using Eubacterium limosum. Applied Microbiology and Biotechnology, 107 (14), 4507-4518. doi: 10.1007/s00253-023-12600-6

Molecular understanding of Eubacterium limosum chemostat methanol metabolism

Wood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Molecular understanding of Eubacterium limosum chemostat methanol metabolism. Sustainable Energy and Fuels, 7 (10), 2397-2412. doi: 10.1039/d2se01551j

Biogas upgrading using Clostridium autoethanogenum for value-added products

Heffernan, James K., Lai, Chun-Yu, Gonzalez-Garcia, R. Axayacatl, Nielsen, Lars Keld, Guo, Jianhua and Marcellin, Esteban (2023). Biogas upgrading using Clostridium autoethanogenum for value-added products. Chemical Engineering Journal, 452 (Part 1) 138950, 1-7. doi: 10.1016/j.cej.2022.138950

Simultaneous production of biohydrogen (bioH2) and poly-hydroxy-alkanoates (PHAs) by a photoheterotrophic consortium bioaugmented with Syntrophomonas wolfei

González, Axayacatl, Salgado, Edgar, Vanegas, Zaira, Niño-Navarro, Cristina, Cortés, Omar, Chairez, Isaac and García-Peña, Elvia I. (2022). Simultaneous production of biohydrogen (bioH2) and poly-hydroxy-alkanoates (PHAs) by a photoheterotrophic consortium bioaugmented with Syntrophomonas wolfei. Fermentation, 8 (11) 644, 1-17. doi: 10.3390/fermentation8110644

Non-target impacts of pesticides on soil N transformations, abundances of nitrifying and denitrifying genes, and nitrous oxide emissions

Das, Shilpi, Wang, Weijin, Reeves, Steven, Dalal, Ram C., Dang, Yash P., Gonzalez, Axayacatl and Kopittke, Peter M. (2022). Non-target impacts of pesticides on soil N transformations, abundances of nitrifying and denitrifying genes, and nitrous oxide emissions. Science of the Total Environment, 844 157043, 1-13. doi: 10.1016/j.scitotenv.2022.157043

Biofertilizers can enhance nitrogen use efficiency of sugarcane

Qiu, Zhiguang, Paungfoo‐Lonhienne, Chanyarat, Ye, Jun, Gonzalez Garcia, Axa , Petersen, Ian, Di Bella, Lawrence, Hobbs, Richard, Ibanez, Minka, Heenan, Marijke, Wang, Weijin, Reeves, Steven and Schmidt, Susanne (2022). Biofertilizers can enhance nitrogen use efficiency of sugarcane. Environmental Microbiology, 24 (8), 3655-3671. doi: 10.1111/1462-2920.16027

Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, Australia

Petersen, Ian, Paungfoo-Lonhienne, Chanyarat, Marcellin, Esteban, Nielsen, Lars Keld and Gonzalez, Axayacatl (2021). Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, Australia. Fermentation, 7 (2) 58, 1-17. doi: 10.3390/fermentation7020058

Transcriptional control of Clostridium autoethanogenum using CRISPRi

Fackler, Nick, Heffernan, James, Juminaga, Alex, Doser, Damien, Nagaraju, Shilpa, Gonzalez-Garcia, R. Axayacatl, Simpson, Séan D., Marcellin, Esteban and Köpke, Michael (2021). Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology, 6 (1) ysab008, 1-8. doi: 10.1093/synbio/ysab008

Nitrogen source influences the effect of plant growth-promoting rhizobacteria (Pgpr) on Macadamia integrifolia

Gallart, Marta, Paungfoo-Lonhienne, Chanyarat, Gonzalez, Axayacatl and Trueman, Stephen J. (2021). Nitrogen source influences the effect of plant growth-promoting rhizobacteria (Pgpr) on Macadamia integrifolia. Agronomy, 11 (6) 1064, 1064. doi: 10.3390/agronomy11061064

Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae

Espinosa, Monica I., Gonzalez-Garcia, Ricardo A., Valgepea, Kaspar, Plan, Manuel R., Scott, Colin, Pretorius, Isak S., Marcellin, Esteban, Paulsen, Ian T. and Williams, Thomas C. (2020). Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae. Nature Communications, 11 (1) 5564, 5564. doi: 10.1038/s41467-020-19390-9

A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversity

McCubbin, Tim, Gonzalez-Garcia, R. Axayacatl, Palfreyman, Robin W., Stowers, Chris, Nielsen, Lars K. and Marcellin, Esteban (2020). A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversity. Genes, 11 (10) 1115, 1-26. doi: 10.3390/genes11101115

Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycle

Gonzalez-Garcia, R. Axayacatl, Nielsen, Lars K. and Marcellin, Esteban (2020). Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycle. Metabolites, 10 (6) 228, 228. doi: 10.3390/metabo10060228

Engineering Escherichia coli for propionic acid production through the Wood‐Werkman cycle

Gonzalez‐Garcia, R. A., McCubbin, T., Turner, M. S., Nielsen, L. K. and Marcellin, E. (2020). Engineering Escherichia coli for propionic acid production through the Wood‐Werkman cycle. Biotechnology and Bioengineering, 117 (1), 167-183. doi: 10.1002/bit.27182

A TetR-family protein (CAETHG_0459) activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogens

Lemgruber, Renato de Souza Pinto, Valgepea, Kaspar, Garcia, Ricardo Axayacatl Gonzalez, de Bakker, Christopher, Palfreyman, Robin William, Tappel, Ryan, Kopke, Michael, Simpson, Sean Dennis, Nielsen, Lars Keld and Marcellin, Esteban (2019). A TetR-family protein (CAETHG_0459) activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogens. Frontiers in Microbiology, 10 2549, 2549. doi: 10.3389/fmicb.2019.02549

Hydrogen production by a mixed photoheterotrophic culture: Correlation between gene expression analysis and physiological behavior

Jurado-Marban, V. H., Tapia-Bustos, M. A., Gonzalez-Garcia, R. A., Salgado-Manjarrez, E. and García-Peña, E. I. (2018). Hydrogen production by a mixed photoheterotrophic culture: Correlation between gene expression analysis and physiological behavior. International Journal of Hydrogen Energy, 44 (2), 641-651. doi: 10.1016/j.ijhydene.2018.10.197

Genome-scale model guided design of Propionibacterium for enhanced propionic acid production

Navone, Laura, McCubbin, Tim, Gonzalez-Garcia, Ricardo A., Nielsen, Lars K. and Marcellin, Esteban (2017). Genome-scale model guided design of Propionibacterium for enhanced propionic acid production. Metabolic Engineering Communications, 6, 1-12. doi: 10.1016/j.meteno.2017.11.001

Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimerase

Gonzalez-Garcia, Ricardo Axayacatl, McCubbin, Tim, Wille, Annalena, Plan, Manuel, Nielsen, Lars Keld and Marcellin, Esteban (2017). Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimerase. Microbial Cell Factories, 16 (1) 121, 121. doi: 10.1186/s12934-017-0735-4

Microbial Propionic Acid Production

Gonzalez Garcia, Ricardo Axayacatl, McCubbin, Timothy, Navone, Laura, Stowers, Chris, Nielsen, Lars K. and Marcellin Saldana, Esteban Stefane (2017). Microbial Propionic Acid Production. Fermentation, 3 (2) 3020021, 1-20. doi: 10.3390/fermentation3020021

Metabolic pathway and flux analysis of H2 production by an anaerobic mixed culture

Gonzalez-Garcia, R. A., Aispuro-Castro, R., Salgado-Manjarrez, E., Aranda-Barradas, J. and Garcia-Pena, E. I. (2017). Metabolic pathway and flux analysis of H2 production by an anaerobic mixed culture. International Journal of Hydrogen Energy, 42 (7), 4069-4082. doi: 10.1016/j.ijhydene.2017.01.043

Continuous two-staged co-digestion process for biohydrogen production from agro-industrial wastes

Gomez-Romero, J., Gonzalez-Garcia, R. A., Chairez, I., Torres, L. and Garcia-Pena, E. I. (2016). Continuous two-staged co-digestion process for biohydrogen production from agro-industrial wastes. International Journal of Energy Research, 40 (2), 257-272. doi: 10.1002/er.3466

Selective adaptation of an anaerobic microbial community: biohydrogen production by co-digestion of cheese whey and vegetables fruit waste

Gomez-Romero, J., Gonzalez-Garcia, A., Chairez, I., Torres, L. and García-Peña, E.I. (2014). Selective adaptation of an anaerobic microbial community: biohydrogen production by co-digestion of cheese whey and vegetables fruit waste. International Journal of Hydrogen Energy, 39 (24), 12541-12550. doi: 10.1016/j.ijhydene.2014.06.050

Metabolic flux distribution and thermodynamic analysis of green fluorescent protein production in recombinant Escherichia coli: the effect of carbon source and CO2 partial pressure

González-García, R. Axayácatl, Garcia-Peña, E. Ines, Salgado-Manjarrez, Edgar and Aranda-Barradas, Juan S. (2013). Metabolic flux distribution and thermodynamic analysis of green fluorescent protein production in recombinant Escherichia coli: the effect of carbon source and CO2 partial pressure. Biotechnology and Bioprocess Engineering, 18 (6), 1049-1061. doi: 10.1007/s12257-013-0277-5

A simple metabolic flux balance analysis of biomass and bioethanol production in Saccharomyces cerevisiae fed-batch cultures

Barrera-Martínez, Iliana, Axayácatl González-García, R., Salgado-Manjarrez, Edgar and Aranda-Barradas, Juan S. (2011). A simple metabolic flux balance analysis of biomass and bioethanol production in Saccharomyces cerevisiae fed-batch cultures. Biotechnology and Bioprocess Engineering, 16 (1), 13-22. doi: 10.1007/s12257-010-0176-y