The University of Queensland

Dormancy and Diapause

Hairston, Nelson G., Fox, Jennifer A. and Yamamichi, Masato (2022). Dormancy and Diapause. Reference Module in Life Sciences. (pp. 15-20) Elsevier. doi: 10.1016/b978-0-12-822562-2.00075-x

Single-gene speciation, balanced polymorphism, and antagonistic coevolution in left-right asymmetry of land snails

Yamamichi, Masato (2022). Single-gene speciation, balanced polymorphism, and antagonistic coevolution in left-right asymmetry of land snails. Lateral asymmetry in animals: predator-prey interactions, dynamics, and evolution. (pp. 275-295) edited by Michio Hori and Satoshi Takahashi . Singapore: Springer Nature . doi: 10.1007/978-981-19-1342-6_10

Effects of rapid evolution on population cycles and extinction in predator–prey systems

Yamamichi, Masato (2020). Effects of rapid evolution on population cycles and extinction in predator–prey systems. Diversity of functional traits and interactions: perspectives on community dynamics. (pp. 19-49) edited by Akihiko Mougi. Singapore, Singapore: Springer Singapore. doi: 10.1007/978-981-15-7953-0_2

Academic publishing requires linguistically inclusive policies

Arenas-Castro, Henry, Berdejo-Espinola, Violeta, Chowdhury, Shawan, Rodríguez-Contreras, Argelia, James, Aubrie R. M., Raja, Nussaïbah B., Dunne, Emma M., Bertolino, Sandro, Emidio, Nayara Braga, Derez, Chantelle M., Drobniak, Szymon M., Fulton, Graham R., Henao-Diaz, L. Francisco, Kaur, Avneet, Kim, Catherine J. S., Lagisz, Malgorzata, Medina, Iliana, Mikula, Peter, Narayan, Vikram P., O'Bryan, Christopher J., Oh, Rachel Rui Ying, Ovsyanikova, Ekaterina, Pérez-Hämmerle, Katharina-Victoria, Pottier, Patrice, Powers, Jennifer Sarah, Rodriguez-Acevedo, Astrid J., Rozak, Andes Hamuraby, Sena, Pedro H. A., Sockhill, Nicola J. ... Amano, Tatsuya (2024). Academic publishing requires linguistically inclusive policies. Proceedings of the Royal Society B: Biological Sciences, 291 (2018) 20232840, 20232840. doi: 10.1098/rspb.2023.2840

Different photoperiodic responses in diapause induction can promote the maintenance of genetic diversity via the storage effect in <i>Daphnia pulex</i>

Otake, Yurie, Yamamichi, Masato, Hirata, Yuka, Odagiri, Haruka and Yoshida, Takehito (2024). Different photoperiodic responses in diapause induction can promote the maintenance of genetic diversity via the storage effect in Daphnia pulex. Proceedings of the Royal Society B: Biological Sciences, 291 (2016) ARTN 20231860, 20231860. doi: 10.1098/rspb.2023.1860

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

Fujita, Hiroaki, Ushio, Masayuki, Suzuki, Kenta, Abe, Masato S., Yamamichi, Masato, Okazaki, Yusuke, Canarini, Alberto, Hayashi, Ibuki, Fukushima, Keitaro, Fukuda, Shinji, Kiers, E. Toby and Toju, Hirokazu (2023). Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics. Frontiers in Microbiology, 14 1261137, 1-11. doi: 10.3389/fmicb.2023.1261137

Frequency‐dependent community dynamics driven by sexual interactions

Yamamichi, Masato, Tsuji, Kaoru, Sakai, Shoko and Svensson, Erik I. (2023). Frequency‐dependent community dynamics driven by sexual interactions. Population Ecology, 65 (4), 204-219. doi: 10.1002/1438-390x.12165

Beyond simple adaptation: Incorporating other evolutionary processes and concepts into eco‐evolutionary dynamics

Yamamichi, Masato, Ellner, Stephen P. and Hairston, Nelson G. (2023). Beyond simple adaptation: Incorporating other evolutionary processes and concepts into eco‐evolutionary dynamics. Ecology Letters, 26 (s1), S16-S21. doi: 10.1111/ele.14197

Eco‐evolutionary maintenance of diversity in fluctuating environments

Yamamichi, Masato, Letten, Andrew D. and Schreiber, Sebastian J. (2023). Eco‐evolutionary maintenance of diversity in fluctuating environments. Ecology Letters, 26 (S1), S152-S167. doi: 10.1111/ele.14286

When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism

Nakazawa, Takefumi, Katayama, Noboru, Utsumi, Shunsuke, Yamawo, Akira and Yamamichi, Masato (2023). When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism. Frontiers in Ecology and Evolution, 11 1138138, 1-9. doi: 10.3389/fevo.2023.1138138

Facilitative interaction networks in experimental microbial community dynamics

Fujita, Hiroaki, Ushio, Masayuki, Suzuki, Kenta, Abe, Masato S., Yamamichi, Masato, Okazaki, Yusuke, Canarini, Alberto, Hayashi, Ibuki, Fukushima, Keitaro, Fukuda, Shinji, Kiers, E. Toby and Toju, Hirokazu (2023). Facilitative interaction networks in experimental microbial community dynamics. Frontiers in Microbiology, 14 1153952, 1-9. doi: 10.3389/fmicb.2023.1153952

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Fujita, Hiroaki, Ushio, Masayuki, Suzuki, Kenta, Abe, Masato S., Yamamichi, Masato, Iwayama, Koji, Canarini, Alberto, Hayashi, Ibuki, Fukushima, Keitaro, Fukuda, Shinji, Kiers, E Toby and Toju, Hirokazu (2023). Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics. Microbiome, 11 (1) 63, 1-16. doi: 10.1186/s40168-023-01474-5

Extending the gleaner‐opportunist trade‐off

Yamamichi, Masato and Letten, Andrew D. (2022). Extending the gleaner‐opportunist trade‐off. Journal of Animal Ecology, 91 (11), 2163-2170. doi: 10.1111/1365-2656.13813

Integrating eco‐evolutionary dynamics and modern coexistence theory

Yamamichi, Masato, Gibbs, Theo and Levine, Jonathan M. (2022). Integrating eco‐evolutionary dynamics and modern coexistence theory. Ecology Letters, 25 (10), 2091-2106. doi: 10.1111/ele.14078

Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain

Hirama, Fumiya, Urabe, Jotaro, Doi, Hideyuki, Kazama, Takehiro, Noguchi, Takumi, Tappenbeck, Tyler H., Katano, Izumi, Yamamichi, Masato, Yoshida, Takehito and Elser, James J. (2022). Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain. Frontiers in Ecology and Evolution, 10 956819. doi: 10.3389/fevo.2022.956819

How does genetic architecture affect eco-evolutionary dynamics? a theoretical perspective

Yamamichi, Masato (2022). How does genetic architecture affect eco-evolutionary dynamics? a theoretical perspective. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1855) 377, 20200504. doi: 10.1098/rstb.2020.0504

Idea paper: controlling trait adaptation to decrease population densities for conservation and management

Kasada, Minoru and Yamamichi, Masato (2022). Idea paper: controlling trait adaptation to decrease population densities for conservation and management. Ecological Research, 37 (4), 475-480. doi: 10.1111/1440-1703.12300

How does the magnitude of genetic variation affect ecological and reproductive character displacement?

Morita, Keiichi and Yamamichi, Masato (2021). How does the magnitude of genetic variation affect ecological and reproductive character displacement?. Population Ecology, 65 (4) 1438-390X.12097, 220-230. doi: 10.1002/1438-390x.12097

Rapid evolution promotes fluctuation‐dependent species coexistence

Yamamichi, Masato and Letten, Andrew D. (2021). Rapid evolution promotes fluctuation‐dependent species coexistence. Ecology Letters, 24 (4), 812-818. doi: 10.1111/ele.13707

Gleaning, fast and slow: In defense of a canonical ecological trade-off

Letten, Andrew D. and Yamamichi, Masato (2021). Gleaning, fast and slow: In defense of a canonical ecological trade-off. Proceedings of the National Academy of Sciences, 118 (5) e2022754118, 1-2. doi: 10.1073/pnas.2022754118

A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors

Kazama, Takehiro, Urabe, Jotaro, Yamamichi, Masato, Tokita, Kotaro, Yin, Xuwang, Katano, Izumi, Doi, Hideyuki, Yoshida, Takehito and Hairston, Nelson G. (2021). A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors. Communications Biology, 4 (1) 49, 49. doi: 10.1038/s42003-020-01587-9

Intraspecific adaptation load: a mechanism for species coexistence

Yamamichi, Masato, Kyogoku, Daisuke, Iritani, Ryosuke, Kobayashi, Kazuya, Takahashi, Yuma, Tsurui-Sato, Kaori, Yamawo, Akira, Dobata, Shigeto, Tsuji, Kazuki and Kondoh, Michio (2020). Intraspecific adaptation load: a mechanism for species coexistence. Trends in Ecology and Evolution, 35 (10), 897-907. doi: 10.1016/j.tree.2020.05.011

Toxic males: density‐dependent male mating harassment can explain geographic parthenogenesis

Yamamichi, Masato and Koizumi, Ichiro (2020). Toxic males: density‐dependent male mating harassment can explain geographic parthenogenesis. Ecological Research, 35 (2), 281-288. doi: 10.1111/1440-1703.12097

Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions

Yamamichi, Masato, Lyberger, Kelsey and Patel, Swati (2019). Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions. Population Ecology, 61 (4), 362-370. doi: 10.1002/1438-390x.12022

How (co)evolution alters predator responses to increased mortality: extinction thresholds and hydra effects

Cortez, Michael H. and Yamamichi, Masato (2019). How (co)evolution alters predator responses to increased mortality: extinction thresholds and hydra effects. Ecology, 100 (10). doi: 10.1002/ecy.2789

When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity

Schreiber, Sebastian J., Yamamichi, Masato and Strauss, Sharon Y. (2019). When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity. Ecology, 100 (7). doi: 10.1002/ecy.2664

Rapid evolution with generation overlap: the double-edged effect of dormancy

Yamamichi, Masato, Hairston, Nelson G., Rees, Mark and Ellner, Stephen P. (2019). Rapid evolution with generation overlap: the double-edged effect of dormancy. Theoretical Ecology, 12 (2), 179-195. doi: 10.1007/s12080-019-0414-7

Modelling inducible defences in predator-prey interactions: assumptions and dynamical consequences of three distinct approaches

Yamamichi, Masato, Klauschies, Toni, Miner, Brooks E. and van Velzen, Ellen (2019). Modelling inducible defences in predator-prey interactions: assumptions and dynamical consequences of three distinct approaches. Ecology Letters, 22 (2) ele.13183, 390-404. doi: 10.1111/ele.13183

A shady phytoplankton paradox: when phytoplankton increases under low light

Yamamichi, Masato, Kazama, Takehiro, Tokita, Kotaro, Katano, Izumi, Doi, Hideyuki, Yoshida, Takehito, Hairston, Nelson G. and Urabe, Jotaro (2018). A shady phytoplankton paradox: when phytoplankton increases under low light. Proceedings of the Royal Society B-Biological Sciences, 285 (1882) 20181067, 20181067. doi: 10.1098/rspb.2018.1067

Core microbiomes for sustainable agroecosystems

Toju, Hirokazu, Peay, Kabir G., Yamamichi, Masato, Narisawa, Kazuhiko, Hiruma, Kei, Naito, Ken, Fukuda, Shinji, Ushio, Masayuki, Nakaoka, Shinji, Onoda, Yusuke, Yoshida, Kentaro, Schlaeppi, Klaus, Bai, Yang, Sugiura, Ryo, Ichihashi, Yasunori, Minamisawa, Kiwamu and Kiers, E. Toby (2018). Core microbiomes for sustainable agroecosystems. Nature Plants, 4 (5), 247-257. doi: 10.1038/s41477-018-0139-4

Roles of maternal effects in maintaining genetic variation: Maternal storage effect

Yamamichi, Masato and Hoso, Masaki (2017). Roles of maternal effects in maintaining genetic variation: Maternal storage effect. Evolution, 71 (2), 449-457. doi: 10.1111/evo.13118

Searching for prey in a three-dimensional environment: hierarchical movements enhance foraging success in northern elephant seals

Adachi, Taiki, Costa, Daniel P., Robinson, Patrick W., Peterson, Sarah H., Yamamichi, Masato, Naito, Yasuhiko and Takahashi, Akinori (2017). Searching for prey in a three-dimensional environment: hierarchical movements enhance foraging success in northern elephant seals. Functional Ecology, 31 (2), 361-369. doi: 10.1111/1365-2435.12686

Species-rich networks and eco-evolutionary synthesis at the metacommunity level

Toju, Hirokazu, Yamamichi, Masato, Guimaraes, Paulo R., Olesen, Jens M., Mougi, Akihiko, Yoshida, Takehito and Thompson, John N. (2017). Species-rich networks and eco-evolutionary synthesis at the metacommunity level. Nature Ecology & Evolution, 1 (2) 0024, 24. doi: 10.1038/s41559-016-0024

Antagonistic coevolution between quantitative and Mendelian traits

Yamamichi, Masato and Ellner, Stephen P. (2016). Antagonistic coevolution between quantitative and Mendelian traits. Proceedings of the Royal Society B-Biological Sciences, 283 (1827) 20152926, 20152926. doi: 10.1098/rspb.2015.2926

Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures

Yen, Jian D. L., Cabral, Reniel B., Cantor, Mauricio, Hatton, Ian, Kortsch, Susanne, Patricio, Joana and Yamamichi, Masato (2016). Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures. Journal of Animal Ecology, 85 (2), 537-547. doi: 10.1111/1365-2656.12484

Nestling polymorphism in a cuckoo-host system

Sato, Nozomu J., Tanaka, Keita D., Okahisa, Yuji, Yamamichi, Masato, Kuehn, Ralph, Gula, Roman, Ueda, Keisuke and Theuerkauf, Joern (2015). Nestling polymorphism in a cuckoo-host system. Current Biology, 25 (24), R1164-R1165. doi: 10.1016/j.cub.2015.11.028

Indirect evolutionary rescue: prey adapts, predator avoids extinction

Yamamichi, Masato and Miner, Brooks E. (2015). Indirect evolutionary rescue: prey adapts, predator avoids extinction. Evolutionary Applications, 8 (8), 787-795. doi: 10.1111/eva.12295

Rapid evolution of a consumer stoichiometric trait destabilizes consumer-producer dynamics

Yamamichi, Masato, Meunier, Cedric L., Peace, Angela, Prater, Clay and Rua, Megan A. (2015). Rapid evolution of a consumer stoichiometric trait destabilizes consumer-producer dynamics. Oikos, 124 (7), 960-969. doi: 10.1111/oik.02388

Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator-prey system

Kasada, Minoru, Yamamichi, Masato and Yoshida, Takehito (2014). Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator-prey system. Proceedings of the National Academy of Sciences of the United States of America, 111 (45), 16035-16040. doi: 10.1073/pnas.1406357111

Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago

Tezuka, A., Kasagi, S., van Oosterhout, C., McMullan, M., Iwasaki, W. M., Kasai, D., Yamamichi, M., Innan, H., Kawamura, S. and Kawata, M. (2014). Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago. Heredity, 113 (5), 381-389. doi: 10.1038/hdy.2014.35

Timing and propagule size of invasion determine its success by a time-varying threshold of demographic regime shift

Yamamichi, Masato, Yoshida, Takehito and Sasaki, Akira (2014). Timing and propagule size of invasion determine its success by a time-varying threshold of demographic regime shift. Ecology, 95 (8), 2303-2315. doi: 10.1890/13-1527.1

Single-gene speciation with pleiotropy: Effects of allele dominance, population size, and delayed inheritance

Yamamichi, Masato and Sasaki, Akira (2013). Single-gene speciation with pleiotropy: Effects of allele dominance, population size, and delayed inheritance. Evolution, 67 (7), 2011-2023. doi: 10.1111/evo.12068

Estimating the migration rate from genetic variation data

Yamamichi, M. and Innan, H. (2012). Estimating the migration rate from genetic variation data. Heredity, 108 (4), 362-363. doi: 10.1038/hdy.2011.83

An Autosomal Analysis Gives No Genetic Evidence for Complex Speciation of Humans and Chimpanzees

Yamamichi, Masato, Gojobori, Jun and Innan, Hideki (2012). An Autosomal Analysis Gives No Genetic Evidence for Complex Speciation of Humans and Chimpanzees. Molecular Biology and Evolution, 29 (1), 145-156. doi: 10.1093/molbev/msr172

Comparing the effects of rapid evolution and phenotypic plasticity on predator-prey dynamics

Yamamichi, Masato, Yoshida, Takehito and Sasaki, Akira (2011). Comparing the effects of rapid evolution and phenotypic plasticity on predator-prey dynamics. American Naturalist, 178 (3), 287-304. doi: 10.1086/661241

Toward an integration of evolutionary biology and ecosystem science

Matthews, Blake, Narwani, Anita, Hausch, Stephen, Nonaka, Etsuko, Peter, Hannes, Yamamichi, Masato, Sullam, Karen E., Bird, Kali C., Thomas, Mridul K., Hanley, Torrance C. and Turner, Caroline B. (2011). Toward an integration of evolutionary biology and ecosystem science. Ecology Letters, 14 (7), 690-701. doi: 10.1111/j.1461-0248.2011.01627.x