The University of Queensland

Transcriptome of sugarcane, a highly complex polyploid

Thirugnanasambandam, Prathima P., Mason, Patrick J., Pazhany, Adhini S., Shanmugavel, SenthilKumar, Hoang, Nam V. and Henry, Robert J. (2021). Transcriptome of sugarcane, a highly complex polyploid. Comprehensive foodomics. (pp. 614-626) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22734-0

Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence

Li, Xin, Li, Bairu, Gu, Shaobin, Pang, Xinyue, Mason, Patrick, Yuan, Jiangfeng, Jia, Jingyu, Sun, Jiaju, Zhao, Chunyan and Henry, Robert (2024). Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence. Nature Communications, 15 (1) 3108, 1-19. doi: 10.1038/s41467-024-47329-x

The effects of UV light and methyl salicylate on phytochemical constituents and nutritional traits in common bean (Phaseolus vulgaris L.)

Ha, P. T.T., Tran, N. T.B., Tuyen, P. T., Mason, P., Henry, R. J. and Loi, T. T. (2023). The effects of UV light and methyl salicylate on phytochemical constituents and nutritional traits in common bean (Phaseolus vulgaris L.). Legume Research, 46 (12) LRF-754, 1597-1603. doi: 10.18805/LRF-754

Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes

Nakandala, Upuli, Masouleh, Ardashir Kharabian, Smith, Malcolm W., Furtado, Agnelo, Mason, Patrick, Constantin, Lena and Henry, Robert J. (2023). Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. Horticulture Research, 10 (05) uhad058, 1-14. doi: 10.1093/hr/uhad058

Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids)

Mason, Patrick J., Hoang, Nam V., Botha, Frederik C., Furtado, Agnelo, Marquardt, Annelie and Henry, Robert J. (2023). Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids). BMC Genomics, 24 (1) 18, 1-18. doi: 10.1186/s12864-023-09124-8

Comparison of the root, leaf and internode transcriptomes in sugarcane (Saccharum spp. hybrids)

Mason, Patrick J., Hoang, Nam V., Botha, Frederik C., Furtado, Agnelo, Marquardt, Annelie and Henry, Robert J. (2022). Comparison of the root, leaf and internode transcriptomes in sugarcane (Saccharum spp. hybrids). Current Research in Biotechnology, 4, 167-178. doi: 10.1016/j.crbiot.2022.02.005

Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots

Mason, Patrick J., Furtado, Agnelo, Marquardt, Annelie, Hodgson-Kratky, Katrina, Hoang, Nam V., Botha, Frederik C., Papa, Gabriella, Mortimer, Jenny C., Simmons, Blake and Henry, Robert J. (2020). Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots. Biotechnology for Biofuels, 13 (1) 201, 1-19. doi: 10.1186/s13068-020-01837-2

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Thirugnanasambandam, Prathima P., Mason, Patrick J., Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2019). Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane. BMC Plant Biology, 19 (1) 160, 160. doi: 10.1186/s12870-019-1733-y

A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Hoang, Nam V., Furtado, Agnelo, Mason, Patrick J., Marquardt, Annelie, Kasirajan, Lakshmi, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2017). A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing. BMC Genomics, 18 (1) 395, 395. doi: 10.1186/s12864-017-3757-8

Investigating the transcriptional control of UDP-glucose metabolism in sugarcane

Mason, Patrick John (2020). Investigating the transcriptional control of UDP-glucose metabolism in sugarcane. PhD Thesis, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland. doi: 10.14264/uql.2020.961