The University of Queensland

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (5), 804-808. doi: 10.1038/s41592-023-02145-x

QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping

Stewart, Ashley Wilton, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Widhalm, Georg, Hangel, Gilbert, Walls, Angela, Goodwin, Jonathan, Eckstein, Korbinian, Tourell, Monique, Morgan, Catherine, Narayanan, Aswin, Barth, Markus and Bollmann, Steffen (2021). QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping. Magnetic Resonance in Medicine, 87 (3), 1289-1300. doi: 10.1002/mrm.29048

qMRI for the masses: how to translate cutting-edge methods in quantitative susceptibility mapping to neuroscience applications

Stewart, Ashley (2022). qMRI for the masses: how to translate cutting-edge methods in quantitative susceptibility mapping to neuroscience applications. OHBM 2022 Educational Courses, Glasgow, Scotland, June 19 2022.

Quantitative susceptibility mapping as an alternative to CT for localizing gold intraprostatic fiducial markers

Stewart, Ashley Wilton, Goodwin, Jonathan, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Barth, Markus and Bollmann, Stefan (2022). Quantitative susceptibility mapping as an alternative to CT for localizing gold intraprostatic fiducial markers. ISMRM 2022, London, United Kingdom, 7-12 May 2022. Concord, CA USA: International Society for Magnetic Resonance in Medicine.

QSMxT: a fully automated, quantitative susceptibility mapping pipeline

Stewart, Ashley, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Walls, Angela, Narayanan, Aswin, Barth, Markus and Bollman, Steffen (2021). QSMxT: a fully automated, quantitative susceptibility mapping pipeline. AusIron 2021, Brisbane, QLD Australia, 29 November 2021. Brisbane, QLD Australia: QIMR Berghofer Medical Research Institute.

QSM as an alternative to CT for localizing gold intraprostatic fiducial markers

Wilton Stewart, Ashley, Goodwin, Jonathan, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Barth, Markus and Bollmann, Steffen (2021). QSM as an alternative to CT for localizing gold intraprostatic fiducial markers. 3rd Annual Meeting of the ISMRM ANZ Chapter, 2021, Online, 22-23 November 2021. International Society for Magnetic Resonance in Medicine ANZ Chapter.

QSMxT:a fully automated, quantitative susceptibility mapping pipeline

Stewart, Ashley Wilton, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Walls, Angela, Narayanan, Aswin, Barth, Markus and Bollmann, Steffen (2021). QSMxT:a fully automated, quantitative susceptibility mapping pipeline. 3rd Annual Meeting of the ISMRM ANZ Chapter, 2021, Online, 22-23 November. International Society for Magnetic Resonance in Medicine ANZ Chapter.

QSMxT - a cross-platform, flexible, lightweight, and scalable processing pipeline for quantitative susceptibility mapping

Stewart, Ashley, Robinson, Simon Daniel, O'Brien, Kieran, Jin, Jin, Walls, Angela, Narayanan, Aswin, Barth, Markus and Bollmann, Steffen (2021). QSMxT - a cross-platform, flexible, lightweight, and scalable processing pipeline for quantitative susceptibility mapping. ISMRM 2021, Online, 15-21 May 2021. Concord, CA USA: International Society for Magnetic Resonance in Medicine.

Robust masking techniques for multi-echo quantitative susceptibility mapping

Stewart, Ashley, Robinson, Simon Daniel, O'Brien, Kieran, Jin, Jin, Widhalm, Georg, Hangel, Gilbert, Walls, Angela, Goodwin, Jonathan, Eckstein, Korbinian, Barth, Markus and Bollmann, Steffen (2021). Robust masking techniques for multi-echo quantitative susceptibility mapping. ISMRM 2021, Online, 15-20 May 2021. Concord, CA United States: International Society for Magnetic Resonance in Medicine.

Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA acceleration

Tourell, Monique, Jin, Jin, Stewart, Ashley, Bollmann, Saskia, Bollmann, Steffen, Robinson, Simon, O'Brien, Kieran and Barth, Markus (2021). Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA acceleration. ISMRM 2021, Online, 15-20 May 2021. Concord, CA United States: International Society for Magnetic Resonance in Medicine.

Clinical viable QSM using accelerated, segmented 3D EPI with inline, automated QSM post-processing

Tourell, Monique, Stewart, Ashley, Jin, Jin, Patil, Sunil, O'Brien, Kieran, Robinson, Simon and Barth, Markus (2020). Clinical viable QSM using accelerated, segmented 3D EPI with inline, automated QSM post-processing. 2020 ISMRM & SMRT Virtual Conference & Exhibition, Online, 8-14 August 2020. Concord, CA United States: International Society for Magnetic Resonance in Medicine.

Quantitative susceptibility mapping with 1mm isotropic resolution in 2 minutes using compressed sensing

Joseph, Arun, Hilbert, Tom, Bonanno, Gabriele, Mussard, Emilie, Forman, Christoph, Stewart, Ashley, O'Brien, Kieran and Kober, Tobias (2020). Quantitative susceptibility mapping with 1mm isotropic resolution in 2 minutes using compressed sensing. 2020 ISMRM & SMRT Virtual Conference & Exhibition, Online, 8-14 August 2020. Concord, CA United States: International Society for Magnetic Resonance in Medicine.

Multi-echo QSM and the challenges with getting an inline QSM pipeline fit for the clinic

Stewart, Ashley (2019). Multi-echo QSM and the challenges with getting an inline QSM pipeline fit for the clinic. The 1st Meeting of the ISMRM ANZ Chapter, Parkville, VIC, Australia, 6 December 2019. ISMRM ANZ Chapter.

Quantitative susceptibility mapping for routine clinical use – an inline automated QSM reconstruction pipeline

Stewart, Ashley, O'Brien, Kieran, Kim, Jinsuh, Maréchal, Bénédicte, Nasrallah, Fatima, Kean, Michael, Barth, Markus and Bollmann, Steffen (2019). Quantitative susceptibility mapping for routine clinical use – an inline automated QSM reconstruction pipeline. ISMRM 2019, Montreal, Canada, 11-16 May 2019. Concord, CA United States: International Society for Magnetic Resonance in Medicine.

Deep-learning-enabled differentiation between intraprostatic gold fiducial markers and calcification in quantitative susceptibility mapping

Stewart, Ashley Wilton, Goodwin, Jonathan, Richardson, Matthew, Robinson, Simon Daniel, O’Brien, Kieran, Jin, Jin, Barth, Markus and Bollmann, Steffen (2023). Deep-learning-enabled differentiation between intraprostatic gold fiducial markers and calcification in quantitative susceptibility mapping.