The University of Queensland

Flexiplex: a versatile demultiplexer and search tool for omics data

Cheng, Oliver, Ling, Min Hao, Wang, Changqing, Wu, Shuyi, Ritchie, Matthew E., Goke, Jonathan, Amin, Noorul and Davidson, Nadia M. (2024). Flexiplex: a versatile demultiplexer and search tool for omics data. Bioinformatics, 40 (3) btae102. doi: 10.1093/bioinformatics/btae102

Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level

Peng, Hongke, Jabbari, Jafar S., Tian, Luyi, Chua, Chong Chyn, Natasha S. Anstee, Amin, Noorul, Wei, Andrew H., Davidson, Nadia M., Roberts, Andrew W., Huang, David C. S., Ritchie, Matthew E. and Thijssen, Rachel (2024). Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level. bioRxiv, 1-25. doi: 10.1101/2024.01.30.577942

Venetoclax has potent efficacy in NPM1 mutated AML with acquired resistance associated with either perturbed pro-survival signalling or NPM1 wild-type populations

Chua, Chong Chyn, Anstee, Natasha, Flensburg, Christoffer, Teh, Charis, Ivey, Adam, Amin, Noorul, Thijssen, Rachel, Bohlander, Stefan K., Kakadia, Purvi M., Xu, Zhen, Fong, Chun Yew, Ting, Stephen, Loo, Sun, Tiong, Ing Soo, Gray, Daniel, Fleming, Shaun, Davidson, Nadia, Roberts, Andrew W., Majewski, Ian, Wei, Andrew H. and Brown, Fiona C. (2023). Venetoclax has potent efficacy in NPM1 mutated AML with acquired resistance associated with either perturbed pro-survival signalling or NPM1 wild-type populations. Blood, 142 (Supplement 1), 423-423. doi: 10.1182/blood-2023-185321

FexRNA: exploratory data analysis and feature selection of non-coding RNA

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2021). FexRNA: exploratory data analysis and feature selection of non-coding RNA. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 18 (6), 2795-2801. doi: 10.1109/tcbb.2021.3057128

Evaluation of deep learning in non-coding RNA classification

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2019). Evaluation of deep learning in non-coding RNA classification. Nature Machine Intelligence, 1 (5), 246-256. doi: 10.1038/s42256-019-0051-2

Distance-constraint k-nearest neighbor searching in mobile sensor networks

Han, Yongkoo, Park, Kisung, Hong, Jihye, Ulamin, Noor and Lee, Young-Koo (2015). Distance-constraint k-nearest neighbor searching in mobile sensor networks. Sensors, 15 (8), 18209-18228. doi: 10.3390/s150818209

Extracting top-K interesting subgraphs with weighted query semantics

Amin, Noorul, Khan, Kifayat Ullah, Dolgorsuren, Batjargal and Lee, Young-Koo (2017). Extracting top-K interesting subgraphs with weighted query semantics. 2017 IEEE International Conference on Big Data and Smart Computing (BigComp), Jeju, South Korea, 13-16 February 2017. New York, NY USA: Institute of Electrical and Electronics Engineers. doi: 10.1109/bigcomp.2017.7881695

On efficiently summarizing a large dynamic graph

Khan, Kifayat Ullah, Rasel, Mostofa Kamal, Noorulamin, Muhammad, Nawaz, Waqas and Lee, Young-Koo (2016). On efficiently summarizing a large dynamic graph. 2016 International Conference on Big Data and Smart Computing (BigComp), Hong Kong, China, 18-20 January 2016. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/bigcomp.2016.7425944

Analyzing subgraph isomorphism on graphs with diverse structural properties

Amin, Noorul, Khan, Kifayat Ullah and Lee, Young-Koo (2015). Analyzing subgraph isomorphism on graphs with diverse structural properties. BigDAS '15: 2015 International Conference on Big Data Applications and Services, Jeju Island, South Korea, 20-23 October 2015. New York, NY USA: Association for Computing Machinery. doi: 10.1145/2837060.2837088